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Parallel Computing
Elsevier Science Publishers B. V.
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Date Reviewed
Reprint of "A parallel connectivity algorithm for de Bruijn graphs in metagenomic applications"
Flick P., Jain C., Pan T., Aluru S. Parallel Computing 70 54-65, 2017. Type: Article
Ed. note: This paper is a reprint, included in a special issue of
Parallel Computing.
It was identified by the ACM Artifact Review and Badging Initiative, and received the “Results Replicated” badge. The other papers in this ...
Apr 13 2018
A technique to automatically determine ad-hoc communication patterns at runtime
Moreton-Fernandez A., Gonzalez-Escribano A., Llanos D. Parallel Computing 69 45-62, 2017. Type: Article
Moreton-Fernandez et al. present an approach to automatically determine communication patterns at runtime for programs that run on distributed-memory parallel systems. Optimizing and tuning code for such systems when using traditional,...
Feb 14 2018
Coarray-based load balancing on heterogeneous and many-core architectures
Cardellini V., Fanfarillo A., Filippone S. Parallel Computing 68 45-58, 2017. Type: Article
Load balancing to gain performance and energy efficiency within a heterogeneous processing environment, which contains processing units with different specialized cores and memory specifications that are supposed to collaborate in a pa...
Dec 12 2017
Traleika Glacier
Cavé V., Clédat R., Griffin P., More A., Seshasayee B., Borkar S., Chatterjee S., Dunning D., Fryman J. Parallel Computing 64 33-49, 2017. Type: Article
Exascale computers require new technologies in both hardware and software because of the increased gap between various memory structures and computational units and the decreased reliability of components due the sheer size of the mach...
Dec 4 2017
Compiler-based code generation and autotuning for geometric multigrid on GPU-accelerated supercomputers
Basu P., Williams S., Van Straalen B., Oliker L., Colella P., Hall M. Parallel Computing 64 50-64, 2017. Type: Article
Basu et al. present a code generation and autotuning technique for geometric multigrid codes targeted for graphics processing unit (GPU)-accelerated supercomputers using the CUDA-CHiLL compilation framework....
Aug 30 2017
The communication-hiding pipelined BiCGstab method for the parallel solution of large unsymmetric linear systems
Cools S., Vanroose W. Parallel Computing 651-20, 2017. Type: Article
In the huge matrices used in high-performance computing (HPC), there exist patterns and relations among the members of the matrix that can be utilized to process the matrices in a more efficient way. Most of the discussions concerned w...
Aug 10 2017
Design and implementation of Java bindings in Open MPI
Vega-Gisbert O., Roman J., Squyres J. Parallel Computing 59(C): 1-20, 2016. Type: Article
You should read this paper if you’re tasked with parallelizing an existing Java application or building a new parallel application with Java and performance is important to you. If you have previously developed with message p...
Jun 14 2017
A GPU-based branch-and-bound algorithm using IntegerVectorMatrix data structure
Gmys J., Mezmaz M., Melab N., Tuyttens D. Parallel Computing 59(C): 119-139, 2016. Type: Article
Gmys et al. address the parallelization of the popular branch-and-bound (B&B) algorithm for solving combinatorial optimization problems using graphics processing units (GPUs). The irregular structure of B&B makes it challenging...
May 17 2017
GPU-accelerated Hungarian algorithms for the linear assignment problem
Date K., Nagi R. Parallel Computing 57(C): 52-72, 2016. Type: Article
The paper is devoted to a fundamental problem in the area of combinatorial optimization--the assignment problem. The goal is to find a maximum (or minimum) weight matching in a weighted bipartite graph. The authors focus on th...
May 11 2017
Massively parallel lattice-Boltzmann codes on large GPU clusters
Calore E., Gabbana A., Kraus J., Pellegrini E., Schifano S., Tripiccione R. Parallel Computing 581-24, 2016. Type: Article
Calore et al. present a detailed overview of the development and optimization process of lattice-Boltzmann code for modern graphics processing units (GPUs). The paper begins with a brief introduction of the lattice-Boltzmann method (LB...
Jan 31 2017
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